To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReQON")

In most cases, you don't need to download the package archive at all.

ReQON

Recalibrating Quality Of Nucleotides

Bioconductor version: Release (2.14)

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <ccabansk at genome.wustl.edu>

Citation (from within R, enter citation("ReQON")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReQON")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

 

PDF R Script ReQON Tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews Preprocessing, QualityControl, Sequencing, Software
Version 1.10.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-2
Depends R (>= 3.0.2), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
Suggests BiocStyle
System Requirements Java version >= 1.6
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ReQON_1.10.0.tar.gz
Windows Binary ReQON_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ReQON_1.10.0.tgz
Mac OS X 10.9 (Mavericks) ReQON_1.10.0.tgz
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