PloGO2

DOI: 10.18129/B9.bioc.PloGO2    

Plot Gene Ontology and KEGG pathway Annotation and Abundance

Bioconductor version: Release (3.11)

Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.

Author: Dana Pascovici, Jemma Wu

Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>

Citation (from within R, enter citation("PloGO2")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PloGO2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PloGO2")

 

PDF R Script PloGO2_vignette.pdf
PDF R Script PloGO2_with_WGNCA_vignette.pdf
PDF   Reference Manual

Details

biocViews Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License GPL-2
Depends R (>= 4.0), GO.db, GOstats
Imports lattice, httr, openxlsx, xtable
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SystemRequirements
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Depends On Me
Imports Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PloGO2_1.0.0.tar.gz
Windows Binary PloGO2_1.0.0.zip
macOS 10.13 (High Sierra) PloGO2_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PloGO2
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PloGO2
Package Short Url https://bioconductor.org/packages/PloGO2/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

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