GeneGA

Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm

Bioconductor version: Release (2.14)

R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile, Vienna RNA Package is needed to ensure GeneGA to function properly.

Author: Zhenpeng Li and Haixiu Huang

Maintainer: Zhenpeng Li <zpli21 at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GeneGA")

To cite this package in a publication, start R and enter:

    citation("GeneGA")

Documentation

PDF R Script GeneGA
PDF   Reference Manual

Details

biocViews GeneExpression, Software
Version 1.14.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL version 2
Depends seqinr, hash, methods
Imports
Suggests
System Requirements
URL http://www.tbi.univie.ac.at/~ivo/RNA/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source GeneGA_1.14.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) GeneGA_1.14.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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