To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSCA")

In most cases, you don't need to download the package archive at all.

GSCA

GSCA: Gene Set Context Analysis

Bioconductor version: Release (3.0)

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("GSCA")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSCA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSCA")

 

PDF R Script GSCA
PDF   Reference Manual

Details

biocViews GUI, GeneExpression, Software, Visualization
Version 1.4.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL(>=2)
Depends shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5, rgl, shinyRGL
Imports graphics
Suggests Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr, Affyhgu133Plus2Expr
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GSCA_1.4.0.tar.gz
Windows Binary GSCA_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GSCA_1.4.0.tgz
Mac OS X 10.9 (Mavericks) GSCA_1.4.0.tgz
Browse/checkout source (username/password: readonly)
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