To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSCA")

In most cases, you don't need to download the package archive at all.

GSCA

 

GSCA: Gene Set Context Analysis

Bioconductor version: Release (3.1)

GSCA takes as input several lists of activated and repressed genes. GSCA then searches through a compendium of publicly available gene expression profiles for biological contexts that are enriched with a specified pattern of gene expression. GSCA provides both traditional R functions and interactive, user-friendly user interface.

Author: Zhicheng Ji, Hongkai Ji

Maintainer: Zhicheng Ji <zji4 at jhu.edu>

Citation (from within R, enter citation("GSCA")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GSCA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSCA")

 

PDF R Script GSCA
PDF   Reference Manual

Details

biocViews GUI, GeneExpression, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 2.14 (R-3.1) (1 year)
License GPL(>=2)
Depends shiny, sp, gplots, ggplot2, reshape2, RColorBrewer, rhdf5, R (>= 2.10.0)
Imports graphics
LinkingTo
Suggests Affyhgu133aExpr, Affymoe4302Expr, Affyhgu133A2Expr, Affyhgu133Plus2Expr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GSCA_1.6.0.tar.gz
Windows Binary GSCA_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) GSCA_1.6.0.tgz
Mac OS X 10.9 (Mavericks) GSCA_1.6.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center