To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOSim")

In most cases, you don't need to download the package archive at all.

GOSim

Computation of functional similarities between GO terms and gene products; GO enrichment analysis

Bioconductor version: Release (2.14)

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Citation (from within R, enter citation("GOSim")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSim")

 

PDF R Script GOsim
PDF   Reference Manual

Details

biocViews Clustering, GO, Network, Software
Version 1.6.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 2)
Depends GO.db, annotate, igraph
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp, utils
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GOSim_1.6.0.tar.gz
Windows Binary GOSim_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GOSim_1.6.0.tgz
Mac OS X 10.9 (Mavericks) GOSim_1.6.0.tgz
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