Dune

DOI: 10.18129/B9.bioc.Dune    

Improving replicability in single-cell RNA-Seq cell type discovery

Bioconductor version: Release (3.11)

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

Author: Hector Roux de Bezieux [aut, cre] , Kelly Street [aut]

Maintainer: Hector Roux de Bezieux <hector.rouxdebezieux at berkeley.edu>

Citation (from within R, enter citation("Dune")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Dune")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Dune")

 

HTML R Script Dune Vignette
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization
Version 1.0.1
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.0)
Imports BiocParallel, SummarizedExperiment, mclust, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr
LinkingTo
Suggests knitr, rmarkdown, testthat (>= 2.1.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Dune_1.0.1.tar.gz
Windows Binary Dune_1.0.1.zip
macOS 10.13 (High Sierra) Dune_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/Dune
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Dune
Package Short Url https://bioconductor.org/packages/Dune/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: