To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CoverageView")

In most cases, you don't need to download the package archive at all.

CoverageView

 

Coverage visualization package for R

Bioconductor version: Release (3.1)

This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome

Author: Ernesto Lowy

Maintainer: Ernesto Lowy <ernestolowy at gmail.com>

Citation (from within R, enter citation("CoverageView")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CoverageView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoverageView")

 

PDF R Script Easy visualization of the read coverage
PDF   Reference Manual

Details

biocViews ChIPSeq, RNASeq, Sequencing, Software, Technology, Visualization
Version 1.5.2
In Bioconductor since BioC 2.14 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 2.10), methods, Rsamtools(>= 1.19.17), rtracklayer
Imports S4Vectors, IRanges, GenomicRanges, GenomicAlignments, parallel, tools
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CoverageView_1.5.2.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) CoverageView_1.5.2.tgz
Mac OS X 10.9 (Mavericks) CoverageView_1.5.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CoverageView/tree/release-3.1
Package Short Url http://bioconductor.org/packages/CoverageView/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center