To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CoverageView")

In most cases, you don't need to download the package archive at all.

CoverageView

Coverage visualization package for R

Bioconductor version: Release (2.14)

This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome

Author: Ernesto Lowy

Maintainer: Ernesto Lowy <ernestolowy at gmail.com>

Citation (from within R, enter citation("CoverageView")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CoverageView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoverageView")

 

PDF R Script Easy visualization of the read coverage
PDF   Reference Manual

Details

biocViews ChIPSeq, RNASeq, Sequencing, Software, Technology, Visualization
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License Artistic-2.0
Depends R (>= 2.10), methods, Rsamtools, rtracklayer
Imports IRanges, GenomicRanges, GenomicAlignments, parallel, tools
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CoverageView_1.0.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) CoverageView_1.0.0.tgz
Mac OS X 10.9 (Mavericks) CoverageView_1.0.0.tgz
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