ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Release (2.14)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at well.ox.ac.uk>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChIPseqR")

Citation (from within R, enter citation("ChIPseqR")):

Documentation

PDF R Script Introduction to ChIPseqR
PDF   Reference Manual

Details

biocViews ChIPSeq, Infrastructure, Software
Version 1.18.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends R (>= 2.10.0), methods, BiocGenerics, ShortRead
Imports Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils
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System Requirements
URL
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Package Downloads

Package Source ChIPseqR_1.18.0.tar.gz
Windows Binary ChIPseqR_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ChIPseqR_1.18.0.tgz
Mac OS X 10.9 (Mavericks) ChIPseqR_1.18.0.tgz
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