ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor version: 3.23 · Package version: 1.66.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPseqR")Details
| Maintainer | Peter Humburg <peter.humburg@gmail.com> |
| Author | Peter Humburg |
| License | GPL (>= 2) |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ChIPSeq, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/ChIPseqR/ |
Citation
From within R, enter citation("ChIPseqR"):
Peter Humburg. ChIPseqR: Identifying Protein Binding Sites in High-Throughput Sequencing Data. doi:10.18129/B9.bioc.ChIPseqR, R package version 1.66.0, https://bioconductor.org/packages/ChIPseqR.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ChIPseqR_1.66.0.tar.gz |
| Windows binary (x86_64) | ChIPseqR_1.66.0.zip |
| macOS binary (arm64) | ChIPseqR_1.66.0.tgz |
| macOS binary (x86_64) | ChIPseqR_1.66.0.tgz |
Dependencies
Depends: R (>= 2.10.0), methods, BiocGenerics, S4Vectors (>= 0.9.25)
Imports: Biostrings, fBasics, GenomicRanges, IRanges (>= 2.5.14), graphics, grDevices, HilbertVis, ShortRead, stats, timsac, utils