To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNORdt")

In most cases, you don't need to download the package archive at all.

CNORdt

 

Add-on to CellNOptR: Discretized time treatments

Bioconductor version: Release (3.1)

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Author: A. MacNamara

Maintainer: A. MacNamara <aidan.macnamara at ebi.ac.uk>

Citation (from within R, enter citation("CNORdt")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNORdt")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORdt")

 

PDF R Script Using multiple time points to train logic models to data
PDF   Reference Manual

Details

biocViews CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version 1.10.0
In Bioconductor since BioC 2.11 (R-2.15) (2.5 years)
License GPL-2
Depends R (>= 1.8.0), CellNOptR(>= 0.99), abind
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNORdt_1.10.0.tar.gz
Windows Binary CNORdt_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNORdt_1.10.0.tgz
Mac OS X 10.9 (Mavericks) CNORdt_1.10.0.tgz
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