BiGGR

Constraint based modeling in R using metabolic reconstruction databases.

Bioconductor version: Release (2.14)

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package aids in performing flux balance analysis (FBA). Metabolic networks and estimated fluxes can be visualized using hypergraphs.

Author: Anand K. Gavai, Hannes Hettling

Maintainer: Anand K. Gavai <anand.gavai at bioinformatics.nl>, Hannes Hettling <hannes.hettling at naturalis.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BiGGR")

To cite this package in a publication, start R and enter:

    citation("BiGGR")

Documentation

PDF R Script BiGGR
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Metabolomics, Network, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License file LICENSE
Depends R (>= 2.14.0), rsbml, hyperdraw, LIM
Imports hypergraph
Suggests
System Requirements
URL http://www.bioconductor.org/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source BiGGR_1.2.0.tar.gz
Windows Binary BiGGR_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BiGGR_1.2.0.tgz
Mac OS X 10.9 (Mavericks)
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