ABSSeq

DOI: 10.18129/B9.bioc.ABSSeq    

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences

Bioconductor version: Release (3.7)

Inferring differential expression genes by absolute counts difference between two groups, utilizing Negative binomial distribution and moderating fold-change according to heterogeneity of dispersion across expression level.

Author: Wentao Yang

Maintainer: Wentao Yang <wyang at zoologie.uni-kiel.de>

Citation (from within R, enter citation("ABSSeq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ABSSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ABSSeq")

 

PDF R Script ABSSeq
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Software
Version 1.34.1
In Bioconductor since BioC 2.14 (R-3.1) (4.5 years)
License GPL (>= 3)
Depends R (>= 2.10), methods
Imports locfit, limma
LinkingTo
Suggests edgeR
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ABSSeq_1.34.1.tar.gz
Windows Binary ABSSeq_1.34.1.zip
Mac OS X 10.11 (El Capitan) ABSSeq_1.34.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/ABSSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ABSSeq
Package Short Url http://bioconductor.org/packages/ABSSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

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