minionSummaryData

DOI: 10.18129/B9.bioc.minionSummaryData    

This is the development version of minionSummaryData; for the stable release version, see minionSummaryData.

Summarised MinION sequencing data published by Ashton et al. 2015

Bioconductor version: Development (3.8)

Summarised MinION sequencing data for Salmonella Typhi published by Ashton et al. in 2015. Three replicate runs are each provided as Fast5Summary objects.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Citation (from within R, enter citation("minionSummaryData")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("minionSummaryData", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("minionSummaryData")

 

HTML R Script Creating example MinION summary dataset
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, SequencingData
Version 1.11.0
License MIT + file LICENSE
Depends R (>= 3.2.0)
Imports
LinkingTo
Suggests BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me IONiseR
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package minionSummaryData_1.11.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/minionSummaryData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/minionSummaryData
Package Short Url http://bioconductor.org/packages/minionSummaryData/
Package Downloads Report Download Stats

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