LRcellTypeMarkers

DOI: 10.18129/B9.bioc.LRcellTypeMarkers    

This is the development version of LRcellTypeMarkers; for the stable release version, see LRcellTypeMarkers.

Marker gene information for LRcell R Bioconductor package

Bioconductor version: Development (3.14)

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

Author: Wenjing Ma [cre, aut]

Maintainer: Wenjing Ma <wenjing.ma at emory.edu>

Citation (from within R, enter citation("LRcellTypeMarkers")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("LRcellTypeMarkers")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LRcellTypeMarkers")

 

HTML R Script LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package using Bioconductor's ExperimentHub
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews ExperimentData, ExperimentHub, ExpressionData, PackageTypeData, RNASeqData, SingleCellData
Version 1.1.1
License MIT + file LICENSE
Depends R (>= 4.1)
Imports ExperimentHub
LinkingTo
Suggests LRcell, BiocStyle, knitr, rmarkdown, roxygen2, testthat
SystemRequirements
Enhances
URL
BugReports https://github.com/marvinquiet/LRcellTypeMarkers/issues
Depends On Me
Imports Me
Suggests Me LRcell
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package LRcellTypeMarkers_1.1.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/LRcellTypeMarkers
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/LRcellTypeMarkers
Package Short Url https://bioconductor.org/packages/LRcellTypeMarkers/
Package Downloads Report Download Stats

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