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JASPAR2014
Data package for JASPAR
Bioconductor version: Development (3.0)
Data package for JASPAR 2014. To search this databases, please use the package TFBSTools.
Author: Ge Tan <ge.tan09 at imperial.ac.uk>
Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("JASPAR2014")
To cite this package in a publication, start R and enter:
citation("JASPAR2014")
Documentation
| Reference Manual |
Details
| biocViews | ExperimentData, GeneRegulation, MotifAnnotation |
| Version | 1.1.0 |
| License | GPL-2 |
| Depends | R (>= 3.0.1), methods, Biostrings(>= 2.29.19) |
| Imports | |
| Suggests | |
| System Requirements | |
| URL | http://jaspar.genereg.net/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | TFBSTools |
Package Downloads
| Package Source | JASPAR2014_1.1.0.tar.gz |
| Windows Binary | JASPAR2014_1.1.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | JASPAR2014_1.1.0.tgz |
| Mac OS X 10.9 (Mavericks) | JASPAR2014_1.1.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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