viper
This is the development version of viper; for the stable release version, see viper.
Virtual Inference of Protein-activity by Enriched Regulon analysis
Bioconductor version: Development (3.19)
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
Author: Mariano J Alvarez <reef103 at gmail.com>
Maintainer: Mariano J Alvarez <reef103 at gmail.com>
Citation (from within R, enter
citation("viper")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("viper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("viper")| Using VIPER | R Script | |
| Reference Manual |
Details
| biocViews | FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology |
| Version | 1.37.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | file LICENSE |
| Depends | R (>= 2.14.0), Biobase, methods |
| Imports | mixtools, stats, parallel, e1071, KernSmooth |
| System Requirements | |
| URL |
See More
| Suggests | bcellViper |
| Linking To | |
| Enhances | |
| Depends On Me | aracne.networks, vulcan |
| Imports Me | diggit, diggitdata, RTN |
| Suggests Me | decoupleR, dorothea, easier, MethReg, MOMA, vulcandata |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | viper_1.37.0.tar.gz |
| Windows Binary | viper_1.37.0.zip |
| macOS Binary (x86_64) | viper_1.37.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/viper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/viper |
| Bioc Package Browser | https://code.bioconductor.org/browse/viper/ |
| Package Short Url | https://bioconductor.org/packages/viper/ |
| Package Downloads Report | Download Stats |