siggenes

Multiple testing using SAM and Efron's empirical Bayes approaches

Bioconductor version: Development (3.0)

Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).

Author: Holger Schwender

Maintainer: Holger Schwender <holger.schw at gmx.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("siggenes")

To cite this package in a publication, start R and enter:

    citation("siggenes")

Documentation

PDF R Script siggenes Manual
PDF   Reference Manual

Details

biocViews DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software
Version 1.39.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL (>= 2)
Depends methods, Biobase, multtest, splines, graphics
Imports stats4
Suggests affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5)
System Requirements
URL
Depends On Me KCsmart, oneChannelGUI
Imports Me charm, DeSousa2013, GeneSelector, minfi
Suggests Me GeneSelector, logicFS, trio, XDE

Package Downloads

Package Source siggenes_1.39.0.tar.gz
Windows Binary siggenes_1.39.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) siggenes_1.39.0.tgz
Mac OS X 10.9 (Mavericks)
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