To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")

In most cases, you don't need to download the package archive at all.

shinyMethyl

DOI: 10.18129/B9.bioc.shinyMethyl    

This is the development version of shinyMethyl; for the stable release version, see shinyMethyl.

Interactive visualization for Illumina methylation arrays

Bioconductor version: Development (3.6)

Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.

Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]

Maintainer: Jean-Philippe Fortin <jfortin at jhsph.edu>

Citation (from within R, enter citation("shinyMethyl")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("shinyMethyl")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("shinyMethyl")

 

PDF R Script shinyMethyl: interactive visualization of Illumina 450K methylation arrays
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.13.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.3.2), shiny (>= 0.13.2), minfi(>= 1.18.2), IlluminaHumanMethylation450kmanifest, matrixStats, R (>= 3.0.0)
Imports RColorBrewer
LinkingTo
Suggests shinyMethylData, minfiData, BiocStyle, RUnit, digest, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package shinyMethyl_1.13.0.tar.gz
Windows Binary shinyMethyl_1.13.0.zip
Mac OS X 10.11 (El Capitan) shinyMethyl_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/shinyMethyl
Package Short Url http://bioconductor.org/packages/shinyMethyl/
Package Downloads Report Download Stats

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