DOI: 10.18129/B9.bioc.rifiComparative  

This is the development version of rifiComparative; for the stable release version, see rifiComparative.

'rifiComparative' compares the output of rifi from two different conditions.

Bioconductor version: Development (3.18)

'rifiComparative' is a continuation of rifi package. It compares two conditions output of rifi using half-life and mRNA at time 0 segments. As an input for the segmentation, the difference between half-life of both condtions and log2FC of the mRNA at time 0 are used. The package provides segmentation, statistics, summary table, fragments visualization and some additional useful plots for further anaylsis.

Author: Loubna Youssar [aut, cre], Jens cre Georg [aut]

Maintainer: Loubna Youssar <lyoussar at gmail.com>

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biocViews DifferentialExpression, GeneRegulation, Microarray, RNASeq, Software, Transcriptomics
Version 1.1.1
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License GPL-3 + file LICENSE
Depends R (>= 4.2)
Imports cowplot, doMC, parallel, dplyr, egg, foreach, ggplot2, ggrepel, graphics, grDevices, grid, methods, nnet, rlang, S4Vectors, scales, stats, stringr, tibble, rtracklayer, utils, writexl, DTA, LSD, reshape2, devtools, SummarizedExperiment
Suggests DescTools, knitr, rmarkdown, BiocStyle
BugReports https://github.com/CyanolabFreiburg/rifiComparative
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