rawrr

DOI: 10.18129/B9.bioc.rawrr    

This is the development version of rawrr; for the stable release version, see rawrr.

Direct Access to Orbitrap Data and Beyond

Bioconductor version: Development (3.14)

This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects (Kockmann T. et al. (2020) ). The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland .

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("rawrr")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rawrr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rawrr")

 

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Details

biocViews MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.1.17
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License GPL-3
Depends R (>= 4.1)
Imports grDevices, graphics, stats, utils
LinkingTo
Suggests BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat
SystemRequirements mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows.
Enhances
URL https://github.com/fgcz/rawrr/
BugReports https://github.com/fgcz/rawrr/issues
Depends On Me
Imports Me MsBackendRawFileReader
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rawrr_1.1.17.tar.gz
Windows Binary rawrr_1.1.17.zip
macOS 10.13 (High Sierra) rawrr_1.1.16.tgz
Source Repository git clone https://git.bioconductor.org/packages/rawrr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rawrr
Package Short Url https://bioconductor.org/packages/rawrr/
Package Downloads Report Download Stats

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