pvac

DOI: 10.18129/B9.bioc.pvac  

This is the development version of pvac; for the stable release version, see pvac.

PCA-based gene filtering for Affymetrix arrays

Bioconductor version: Development (3.18)

The package contains the function for filtering genes by the proportion of variation accounted for by the first principal component (PVAC).

Author: Jun Lu and Pierre R. Bushel

Maintainer: Jun Lu <jlu276 at gmail.com>, Pierre R. Bushel <bushel at niehs.nih.gov>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("pvac")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Software
Version	1.49.0
In Bioconductor since	BioC 2.8 (R-2.13) (12 years)
License	LGPL (>= 2.0)
Depends	R (>= 2.8.0)
Imports	affy(>= 1.20.0), stats, Biobase
LinkingTo
Suggests	pbapply, affydata, ALLMLL, genefilter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	pvac_1.49.0.zip
macOS Binary (x86_64)	pvac_1.49.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/pvac
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pvac
Bioc Package Browser	https://code.bioconductor.org/browse/pvac/
Package Short Url	https://bioconductor.org/packages/pvac/
Package Downloads Report	Download Stats