ncRNAtools

DOI: 10.18129/B9.bioc.ncRNAtools    

This is the development version of ncRNAtools; for the stable release version, see ncRNAtools.

An R toolkit for non-coding RNA

Bioconductor version: Development (3.13)

ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.

Author: Lara Selles Vidal [cre, aut] , Rafael Ayala [aut] , Guy-Bart Stan [aut] , Rodrigo Ledesma-Amaro [aut]

Maintainer: Lara Selles Vidal <lara.selles12 at imperial.ac.uk>

Citation (from within R, enter citation("ncRNAtools")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ncRNAtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization
Version 1.1.0
In Bioconductor since BioC 3.12 (R-4.0) (< 6 months)
License GPL-3
Depends
Imports httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors
LinkingTo
Suggests knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
BugReports https://github.com/LaraSellesVidal/ncRNAtools/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary ncRNAtools_1.1.0.zip
macOS 10.13 (High Sierra) ncRNAtools_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ncRNAtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ncRNAtools
Package Short Url https://bioconductor.org/packages/ncRNAtools/
Package Downloads Report Download Stats

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