mosaics

DOI: 10.18129/B9.bioc.mosaics    

This is the development version of mosaics; for the stable release version, see mosaics.

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Development (3.9)

This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("mosaics")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("mosaics", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mosaics")

 

PDF R Script MOSAiCS
PDF   Reference Manual
Text   NEWS

Details

biocViews Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version 2.21.0
In Bioconductor since BioC 2.8 (R-2.13) (7.5 years)
License GPL (>= 2)
Depends R (>= 3.0.0), methods, graphics, Rcpp
Imports MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, GenomeInfoDb, S4Vectors
LinkingTo Rcpp
Suggests mosaicsExample
SystemRequirements Perl
Enhances parallel
URL http://groups.google.com/group/mosaics_user_group
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mosaics_2.21.0.tar.gz
Windows Binary mosaics_2.21.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) mosaics_2.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/mosaics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mosaics
Package Short Url http://bioconductor.org/packages/mosaics/
Package Downloads Report Download Stats

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