made4

This is the development version of made4; for the stable release version, see made4.

Multivariate analysis of microarray data using ADE4

Bioconductor version: Development (3.19)

Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.

Author: Aedin Culhane

Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>

Citation (from within R, enter citation("made4")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("made4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics
Version	1.77.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 19 years)
License	Artistic-2.0
Depends	RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment
Imports	ade4
System Requirements
URL	http://www.hsph.harvard.edu/aedin-culhane/

Suggests	affy, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	omicade4
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/made4
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/made4
Package Short Url	https://bioconductor.org/packages/made4/
Package Downloads Report	Download Stats