DOI: 10.18129/B9.bioc.mCSEA    

This is the development version of mCSEA; to use it, please install the devel version of Bioconductor.

Methylated CpGs Set Enrichment Analysis

Bioconductor version: Development (3.7)

Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands...) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.

Author: Jordi Martorell-Marugán and Pedro Carmona-Sáez

Maintainer: Jordi Martorell-Marugán <jmartorellm at>

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PDF R Script Predefined DMRs identification with mCSEA package
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biocViews DNAMethylation, DifferentialMethylation, Epigenetics, Genetics, GenomeAnnotation, MethylationArray, Microarray, MultipleComparison, Software, TwoChannel
Version 0.99.12
License GPL-2
Depends R (>= 3.5), mCSEAdata, Homo.sapiens
Imports fgsea, GenomicFeatures, GenomicRanges, ggplot2, graphics, grDevices, Gviz, IRanges, limma, parallel, S4Vectors, stats, SummarizedExperiment, utils
Suggests Biobase, BiocGenerics, BiocStyle, knitr, leukemiasEset, rmarkdown, RUnit
Depends On Me
Imports Me
Suggests Me
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