DOI: 10.18129/B9.bioc.igvR    

This is the development version of igvR; for the stable release version, see igvR.

igvR: integrative genomics viewer

Bioconductor version: Development (3.16)

Access to igv.js, the Integrative Genomics Viewer running in a web browser.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("igvR")):


To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Choose a Stock or Custom Genome
HTML R Script Explore ChIP-seq alignments from a bam file, MACS2 narrowPeaks, conservation, H3K4me3 methylation and motif matching
HTML R Script Explore CTCF ChIP-seq alignments, MACS2 narrowPeaks, Motif Matching and H3K4me3 methylation
HTML R Script Explore VCF variants, GWAS snps, promoters and histone marks around the MEF2C gene in Alzheimers Disease
HTML R Script Introduction: a simple demo
HTML R Script Obtain and Display H3K4Me3 K562 track from UCSC table browser
HTML R Script Paired-end Interaction Tracks
HTML R Script Use a Custom Genome
HTML R Script Use a Stock Genome
PDF   Reference Manual
Text   NEWS


biocViews GenomeBrowsers, Software, ThirdPartyClient, Visualization
Version 1.17.14
In Bioconductor since BioC 3.7 (R-3.5) (4.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), GenomicRanges, GenomicAlignments, BrowserViz(>= 2.17.1)
Imports methods, BiocGenerics, httpuv, utils, MotifDb, seqLogo, rtracklayer, VariantAnnotation, RColorBrewer, httr
Suggests RUnit, BiocStyle, knitr, rmarkdown
URL https://paul-shannon.github.io/igvR/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package igvR_1.17.14.tar.gz
Windows Binary igvR_1.17.14.zip
macOS 10.13 (High Sierra) igvR_1.17.12.tgz
Source Repository git clone https://git.bioconductor.org/packages/igvR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/igvR
Package Short Url https://bioconductor.org/packages/igvR/
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