hypeR

DOI: 10.18129/B9.bioc.hypeR  

This is the development version of hypeR; for the stable release version, see hypeR.

An R Package For Geneset Enrichment Workflows

Bioconductor version: Development (3.18)

An R Package for Geneset Enrichment Workflows.

Author: Anthony Federico [aut, cre], Stefano Monti [aut]

Maintainer: Anthony Federico <anfed at bu.edu>

Citation (from within R, enter citation("hypeR")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("hypeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Annotation, GeneSetEnrichment, Pathways, Software
Version 1.17.0
In Bioconductor since BioC 3.9 (R-3.6) (4 years)
License GPL-3 + file LICENSE
Depends R (>= 3.6.0)
Imports ggplot2, ggforce, R6, magrittr, dplyr, purrr, stats, stringr, scales, rlang, httr, openxlsx, htmltools, reshape2, reactable, msigdbr, kableExtra, rmarkdown, igraph, visNetwork, shiny
LinkingTo
Suggests tidyverse, devtools, testthat, knitr
SystemRequirements
Enhances
URL https://github.com/montilab/hypeR
BugReports https://github.com/montilab/hypeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/hypeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/hypeR
Package Short Url https://bioconductor.org/packages/hypeR/
Package Downloads Report Download Stats

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