gtrellis

DOI: 10.18129/B9.bioc.gtrellis    

This is the development version of gtrellis; for the stable release version, see gtrellis.

Genome Level Trellis Layout

Bioconductor version: Development (3.8)

Genome level Trellis graph visualizes genomic data conditioned by genomic categories (e.g. chromosomes). For each genomic category, multiple dimensional data which are represented as tracks describe different features from different aspects. This package provides high flexibility to arrange genomic categories and to add self-defined graphics in the plot.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("gtrellis")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gtrellis", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gtrellis")

 

HTML R Script Make Genome-level Trellis Graph
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Sequencing, Software, Visualization
Version 1.13.3
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), grid, IRanges, GenomicRanges
Imports circlize (>= 0.3.3), GetoptLong, grDevices, utils
LinkingTo
Suggests testthat (>= 1.0.0), knitr, RColorBrewer, markdown, ComplexHeatmap(>= 1.9.7), Cairo, png, jpeg, tiff
SystemRequirements
Enhances
URL https://github.com/jokergoo/gtrellis
Depends On Me
Imports Me YAPSA
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gtrellis_1.13.3.tar.gz
Windows Binary gtrellis_1.13.3.zip
Mac OS X 10.11 (El Capitan) gtrellis_1.13.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/gtrellis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gtrellis
Package Short Url http://bioconductor.org/packages/gtrellis/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: