To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("groHMM")

In most cases, you don't need to download the package archive at all.

groHMM

DOI: 10.18129/B9.bioc.groHMM    

This is the development version of groHMM; for the stable release version, see groHMM.

GRO-seq Analysis Pipeline

Bioconductor version: Development (3.7)

A pipeline for the analysis of GRO-seq data.

Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus

Maintainer: Anusha Nagari <anusha.nagari at utsouthwestern.edu>, Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>

Citation (from within R, enter citation("groHMM")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("groHMM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("groHMM")

 

PDF R Script groHMM tutorial
PDF   Reference Manual
Text   NEWS

Details

biocViews Sequencing, Software
Version 1.13.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL-3
Depends R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.9.25), IRanges(>= 2.5.27), GenomeInfoDb, GenomicRanges(>= 1.23.16), GenomicAlignments, rtracklayer
Imports
LinkingTo
Suggests BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL https://github.com/Kraus-Lab/groHMM
BugReports https://github.com/Kraus-Lab/groHMM/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package groHMM_1.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) groHMM_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/groHMM
Package Short Url http://bioconductor.org/packages/groHMM/
Package Downloads Report Download Stats

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