graper

DOI: 10.18129/B9.bioc.graper    

This is the development version of graper; to use it, please install the devel version of Bioconductor.

Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes

Bioconductor version: Development (3.9)

This package enables regression and classification on high-dimensional data with different relative strengths of penalization for different feature groups, such as different assays or omic types. The optimal relative strengths are chosen adaptively. Optimisation is performed using a variational Bayes approach.

Author: Britta Velten [aut, cre], Wolfgang Huber [aut]

Maintainer: Britta Velten <britta.velten at embl.de>

Citation (from within R, enter citation("graper")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("graper", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graper")

 

HTML R Script example_linear
HTML R Script example_logistic
PDF   Reference Manual
Text   NEWS

Details

biocViews Bayesian, Classification, Regression, Software
Version 0.99.3
License GPL (>= 2)
Depends R (>= 3.6)
Imports Matrix, Rcpp, stats, ggplot2, methods, cowplot, matrixStats
LinkingTo Rcpp, RcppArmadillo, BH
Suggests knitr, rmarkdown, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package graper_0.99.3.tar.gz
Windows Binary graper_0.99.3.zip
Mac OS X 10.11 (El Capitan) graper_0.99.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/graper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/graper
Package Short Url http://bioconductor.org/packages/graper/
Package Downloads Report Download Stats

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