flowMap

DOI: 10.18129/B9.bioc.flowMap  

This is the development version of flowMap; for the stable release version, see flowMap.

Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test

Bioconductor version: Development (3.18)

flowMap quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The method is able to map cell populations of different size, shape, and proportion across multiple flow cytometry samples. The algorithm can be incorporate in any flow cytometry work flow that requires accurat quantification of similarity between cell populations.

Author: Chiaowen Joyce Hsiao, Yu Qian, and Richard H. Scheuermann

Maintainer: Chiaowen Joyce Hsiao <joyce.hsiao1 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	FlowCytometry, ImmunoOncology, MultipleComparison, Software
Version	1.39.0
In Bioconductor since	BioC 2.13 (R-3.0) (9.5 years)
License	GPL (>=2)
Depends	R (>= 3.0.1), ade4 (>= 1.5-2), doParallel (>= 1.0.3), abind (>= 1.4.0), reshape2 (>= 1.2.2), scales (>= 0.2.3), Matrix (>= 1.1-4), methods (>= 2.14)
Imports
LinkingTo
Suggests	BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	flowMap_1.39.0.zip
macOS Binary (x86_64)	flowMap_1.39.0.tgz
macOS Binary (arm64)	flowMap_1.39.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowMap
Bioc Package Browser	https://code.bioconductor.org/browse/flowMap/
Package Short Url	https://bioconductor.org/packages/flowMap/
Package Downloads Report	Download Stats