To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ffpe")

In most cases, you don't need to download the package archive at all.

ffpe

This is the development version of ffpe; for the stable release version, see ffpe.

Quality assessment and control for FFPE microarray expression data

Bioconductor version: Development (3.0)

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <levi.waldron at hunter.cuny.edu>

Citation (from within R, enter citation("ffpe")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ffpe")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ffpe")

 

PDF R Script ffpe package user guide
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, QualityControl, Software
Version 1.9.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL (>2)
Depends R (>= 2.10.0), TTR, methods
Imports Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
Suggests genefilter, ffpeExampleData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ffpe_1.9.0.tar.gz
Windows Binary ffpe_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ffpe_1.9.0.tgz
Mac OS X 10.9 (Mavericks) ffpe_1.9.0.tgz
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