ffpe

Quality assessment and control for FFPE microarray expression data

Bioconductor version: Development (3.0)

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author: Levi Waldron

Maintainer: Levi Waldron <levi.waldron at hunter.cuny.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ffpe")

To cite this package in a publication, start R and enter:

    citation("ffpe")

Documentation

PDF R Script ffpe package user guide
PDF   Reference Manual

Details

biocViews GeneExpression, Microarray, QualityControl, Software
Version 1.9.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL (>2)
Depends R (>= 2.10.0), TTR, methods
Imports Biobase, BiocGenerics, affy, lumi, methylumi, sfsmisc
Suggests genefilter, ffpeExampleData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ffpe_1.9.0.tar.gz
Windows Binary ffpe_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ffpe_1.9.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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