epistack

DOI: 10.18129/B9.bioc.epistack    

This is the development version of epistack; for the stable release version, see epistack.

Heatmaps of Stack Profiles from Epigenetic Signals

Bioconductor version: Development (3.15)

The epistack package main objective is the visualizations of stacks of genomic tracks (such as, but not restricted to, ChIP-seq, ATAC-seq, DNA methyation or genomic conservation data) centered at genomic regions of interest.

Author: SACI Safia [aut], DEVAILLY Guillaume [cre]

Maintainer: DEVAILLY Guillaume <gdevailly at hotmail.com>

Citation (from within R, enter citation("epistack")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("epistack")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epistack")

 

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Details

biocViews ChIPSeq, GeneExpression, Preprocessing, RNASeq, Software
Version 1.1.2
In Bioconductor since BioC 3.14 (R-4.1) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.1)
Imports GenomicRanges, SummarizedExperiment, BiocGenerics, S4Vectors, IRanges, viridisLite, graphics, plotrix, grDevices, stats, methods
LinkingTo
Suggests testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, EnrichedHeatmap, biomaRt, rtracklayer, covr, vdiffr, magick
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package epistack_1.1.2.tar.gz
Windows Binary
macOS 10.13 (High Sierra) epistack_1.1.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/epistack
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/epistack
Package Short Url https://bioconductor.org/packages/epistack/
Package Downloads Report Download Stats

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