To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affxparser")

In most cases, you don't need to download the package archive at all.

affxparser

 

   

This is the development version of affxparser; for the stable release version, see affxparser.

Affymetrix File Parsing SDK

Bioconductor version: Development (3.4)

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("affxparser")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("affxparser")

Documentation

PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Microarray, OneChannel, ProprietaryPlatforms, Software
Version 1.45.1
In Bioconductor since BioC 1.7 (R-2.2) (11 years)
License LGPL (>= 2)
Depends R (>= 2.14.0)
Imports
LinkingTo
Suggests R.oo (>= 1.20.0), R.utils (>= 2.4.0), AffymetrixDataTestFiles
SystemRequirements
Enhances
URL https://github.com/HenrikBengtsson/affxparser
BugReports https://github.com/HenrikBengtsson/affxparser/issues
Depends On Me ITALICS, pdInfoBuilder, Starr
Imports Me affyILM, cn.farms, crossmeta, GeneRegionScan, ITALICS, oligo
Suggests Me TIN
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affxparser_1.45.1.tar.gz
Windows Binary affxparser_1.45.1.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) affxparser_1.45.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/affxparser
Package Short Url http://bioconductor.org/packages/affxparser/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: