DOI: 10.18129/B9.bioc.SIMAT    

This is the development version of SIMAT; for the stable release version, see SIMAT.

GC-SIM-MS data processing and alaysis tool

Bioconductor version: Development (3.8)

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Author: Mo R. Nezami Ranjbar <nranjbar at>

Maintainer: Mo R. Nezami Ranjbar <nranjbar at>

Citation (from within R, enter citation("SIMAT")):


To install this package, start R and enter:

if (!require("BiocManager"))
BiocManager::install("SIMAT", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script SIMAT Usage
PDF   Reference Manual
Text   NEWS


biocViews MassSpectrometry, Metabolomics, Software
Version 1.13.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License GPL-2
Depends R (>= 3.4.0), Rcpp (>= 0.11.3)
Imports mzR, ggplot2, grid, reshape2
Suggests RUnit, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SIMAT_1.13.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) SIMAT_1.13.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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