Spatial Analysis of Network Associations

Bioconductor version: Development (3.0)

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network. Vertices can also be individually ranked by their strength of association with high-weight vertices.

Author: Alex Cornish and Florian Markowetz

Maintainer: Alex Cornish <a.cornish12 at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Using SANTA
PDF   Reference Manual
Text   NEWS


biocViews Clustering, Network, NetworkEnrichment, Software
Version 1.5.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends R (>= 2.14), igraph
Imports Matrix, msm, snow
Suggests RUnit, BiocGenerics, org.Sc.sgd.db
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source SANTA_1.5.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) SANTA_1.5.0.tgz
Mac OS X 10.9 (Mavericks)
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