To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rbowtie2")

In most cases, you don't need to download the package archive at all.

Rbowtie2

DOI: 10.18129/B9.bioc.Rbowtie2    

This is the development version of Rbowtie2; to use it, please install the devel version of Bioconductor.

An R Wrapper for Bowtie2 and AdapterRemoval

Bioconductor version: Development (3.6)

This package provides an R wrapper of the popular bowtie2 sequencing reads aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification, and read merging.

Author: Zheng Wei, Wei Zhang

Maintainer: Zheng Wei <wzweizheng at qq.com>

Citation (from within R, enter citation("Rbowtie2")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rbowtie2")

Documentation

HTML R Script An Introduction to Rbowtie2
PDF   Reference Manual

Details

biocViews Alignment, Preprocessing, Sequencing, Software
Version 0.99.11
License GPL (>= 3)
Depends R (>= 3.4.1)
Imports
LinkingTo
Suggests knitr
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rbowtie2_0.99.11.tar.gz
Windows Binary Rbowtie2_0.99.11.zip (64-bit only)
Mac OS X 10.11 (El Capitan) Rbowtie2_0.99.11.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rbowtie2
Package Short Url http://bioconductor.org/packages/Rbowtie2/
Package Downloads Report Download Stats

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