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RUVcorr

This is the development version of RUVcorr; for the stable release version, see RUVcorr.

Removal of unwanted variation for gene-gene correlations and related analysis


Bioconductor version: Development (3.19)

RUVcorr allows to apply global removal of unwanted variation (ridged version of RUV) to real and simulated gene expression data.

Author: Saskia Freytag

Maintainer: Saskia Freytag <saskia.freytag at perkins.uwa.edu.au>

Citation (from within R, enter citation("RUVcorr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RUVcorr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RUVcorr")
Vignette HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews GeneExpression, Normalization, Software
Version 1.35.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends
Imports corrplot, MASS, stats, lattice, grDevices, gridExtra, snowfall, psych, BiocParallel, grid, bladderbatch, reshape2, graphics
System Requirements
URL
See More
Suggests knitr, hgu133a2.db, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RUVcorr_1.35.0.tar.gz
Windows Binary RUVcorr_1.35.0.zip
macOS Binary (x86_64) RUVcorr_1.35.0.tgz
macOS Binary (arm64) RUVcorr_1.35.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RUVcorr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RUVcorr
Bioc Package Browser https://code.bioconductor.org/browse/RUVcorr/
Package Short Url https://bioconductor.org/packages/RUVcorr/
Package Downloads Report Download Stats