RNAmodR.ML

DOI: 10.18129/B9.bioc.RNAmodR.ML    

This is the development version of RNAmodR.ML; to use it, please install the devel version of Bioconductor.

Detecting patterns of post-transcriptional modifications using machine learning

Bioconductor version: Development (3.10)

RNAmodR.ML extend the functionality of the RNAmodR package and classical detection strategies towards detection through machine learning models. RNAmodR.ML provides classes, functions and an example workflow to establish a detection stratedy, which can be packaged.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.ML")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RNAmodR.ML")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.ML")

 

PDF R Script RNAmodR.ML
PDF   Reference Manual
Text   NEWS

Details

biocViews Infrastructure, Sequencing, Software, Visualization, WorkflowStep
Version 0.99.5
In Bioconductor since BioC 3.10 (R-3.6)
License Artistic-2.0
Depends R (>= 3.6), RNAmodR
Imports methods, assertive, BiocGenerics, S4Vectors, IRanges, GenomicRanges, stats, ranger
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data, RNAmodR.AlkAnilineSeq, GenomicFeatures, Rsamtools, rtracklayer, keras
SystemRequirements
Enhances
URL https://github.com/FelixErnst/RNAmodR.ML
BugReports https://github.com/FelixErnst/RNAmodR.ML/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAmodR.ML_0.99.5.tar.gz
Windows Binary RNAmodR.ML_0.99.5.zip
Mac OS X 10.11 (El Capitan) RNAmodR.ML_0.99.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.ML
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.ML
Package Short Url https://bioconductor.org/packages/RNAmodR.ML/
Package Downloads Report Download Stats

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