RITAN

DOI: 10.18129/B9.bioc.RITAN    

This is the development version of RITAN; for the stable release version, see RITAN.

Rapid Integration of Term Annotation and Network resources

Bioconductor version: Development (3.8)

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Author: Michael Zimmermann

Maintainer: Michael Zimmermann <mtzimmermann at mcw.edu>

Citation (from within R, enter citation("RITAN")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RITAN", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RITAN")

 

HTML R Script Choosing Resources
HTML R Script Enrichment Vignette
HTML R Script Multi-Tissue Analysis
HTML R Script Network Biology Vignette
HTML R Script Relationships Among Resources
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews FunctionalGenomics, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, QualityControl, Software
Version 1.5.5
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License file LICENSE
Depends R (>= 3.4)
Imports graphics, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, dynamicTreeCut, sqldf, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata
LinkingTo
Suggests rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RITAN_1.5.5.tar.gz
Windows Binary RITAN_1.5.5.zip
Mac OS X 10.11 (El Capitan) RITAN_1.5.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/RITAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RITAN
Package Short Url http://bioconductor.org/packages/RITAN/
Package Downloads Report Download Stats

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