To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("R4RNA")

In most cases, you don't need to download the package archive at all.

R4RNA

DOI: 10.18129/B9.bioc.R4RNA    

This is the development version of R4RNA; for the stable release version, see R4RNA.

An R package for RNA visualization and analysis

Bioconductor version: Development (3.6)

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.

Author: Daniel Lai, Irmtraud Meyer <irmtraud.meyer at cantab.net>

Maintainer: Daniel Lai <jujubix at cs.ubc.ca>

Citation (from within R, enter citation("R4RNA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("R4RNA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("R4RNA")

 

PDF R Script R4RNA
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization
Version 1.5.0
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License GPL-3
Depends R (>= 3.2.0), Biostrings(>= 2.38.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL http://www.e-rna.org/r-chie/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package R4RNA_1.5.0.tar.gz
Windows Binary R4RNA_1.5.0.zip
Mac OS X 10.11 (El Capitan) R4RNA_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/R4RNA
Package Short Url http://bioconductor.org/packages/R4RNA/
Package Downloads Report Download Stats

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