To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MPFE")

In most cases, you don't need to download the package archive at all.

MPFE

DOI: 10.18129/B9.bioc.MPFE    

This is the development version of MPFE; for the stable release version, see MPFE.

Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Bioconductor version: Development (3.6)

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Author: Peijie Lin, Sylvain Foret, Conrad Burden

Maintainer: Conrad Burden <conrad.burden at anu.edu.au>

Citation (from within R, enter citation("MPFE")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MPFE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MPFE")

 

PDF R Script MPFE
PDF   Reference Manual
Text   README

Details

biocViews DNAMethylation, HighThroughputSequencingData, MethylSeq, Software
Version 1.13.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License GPL (>= 3)
Depends
Imports
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MPFE_1.13.0.tar.gz
Windows Binary MPFE_1.13.0.zip
Mac OS X 10.11 (El Capitan) MPFE_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MPFE
Package Short Url http://bioconductor.org/packages/MPFE/
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