To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEAL")

In most cases, you don't need to download the package archive at all.

MEAL

DOI: 10.18129/B9.bioc.MEAL    

This is the development version of MEAL; for the stable release version, see MEAL.

Perform methylation analysis

Bioconductor version: Development (3.7)

Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.

Author: Carlos Ruiz-Arenas [aut, cre], Juan R. Gonzalez [aut]

Maintainer: Carlos Ruiz-Arenas <carlos.ruiz at isglobal.org>

Citation (from within R, enter citation("MEAL")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MEAL")

Documentation

HTML R Script Methylation Analysis with MEAL
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DNAMethylation, Microarray, Software, WholeGenome
Version 1.9.0
In Bioconductor since BioC 3.2 (R-3.2) (2 years)
License Artistic-2.0
Depends R (>= 3.2.0), Biobase, MultiDataSet
Imports GenomicRanges, SNPassoc, limma, DMRcate, snpStats, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, doParallel, parallel, ggplot2 (>= 2.0.0), permute, Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA, graphics, stats, utils, matrixStats
LinkingTo
Suggests testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MEAL_1.9.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/MEAL
Package Short Url http://bioconductor.org/packages/MEAL/
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