MDTS
This is the development version of MDTS; for the stable release version, see MDTS.
Detection of de novo deletion in targeted sequencing trios
Bioconductor version: Development (3.19)
A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.
Author: Jack M.. Fu [aut, cre]
Maintainer: Jack M.. Fu <jmfu at jhsph.edu>
Citation (from within R, enter
citation("MDTS")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MDTS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | Coverage, DataImport, Sequencing, Software, StatisticalMethod, TargetedResequencing, Technology |
Version | 1.23.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0) |
Imports | GenomicAlignments, GenomicRanges, IRanges, Biostrings, DNAcopy, Rsamtools, parallel, stringr |
System Requirements | |
URL |
See More
Suggests | testthat, knitr |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/MDTS |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MDTS |
Package Short Url | https://bioconductor.org/packages/MDTS/ |
Package Downloads Report | Download Stats |