To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBAmethyl")

In most cases, you don't need to download the package archive at all.

MBAmethyl

DOI: 10.18129/B9.bioc.MBAmethyl    

This is the development version of MBAmethyl; for the stable release version, see MBAmethyl.

Model-based analysis of DNA methylation data

Bioconductor version: Development (3.6)

This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.

Author: Tao Wang, Mengjie Chen

Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>

Citation (from within R, enter citation("MBAmethyl")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBAmethyl")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBAmethyl")

 

PDF R Script MBAmethyl Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, MethylationArray, Software
Version 1.11.0
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License Artistic-2.0
Depends R (>= 2.15)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MBAmethyl_1.11.0.tar.gz
Windows Binary MBAmethyl_1.11.0.zip
Mac OS X 10.11 (El Capitan) MBAmethyl_1.11.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MBAmethyl
Package Short Url http://bioconductor.org/packages/MBAmethyl/
Package Downloads Report Download Stats

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