MACSr

DOI: 10.18129/B9.bioc.MACSr    

This is the development version of MACSr; to use it, please install the devel version of Bioconductor.

MACS: Model-based Analysis for ChIP-Seq

Bioconductor version: Development (3.13)

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Author: Qiang Hu [aut, cre]

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>

Citation (from within R, enter citation("MACSr")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MACSr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSr")

 

HTML R Script MACSr
PDF   Reference Manual
Text   LICENSE

Details

biocViews ATACSeq, ChIPSeq, ImmunoOncology, Software
Version 0.99.15
In Bioconductor since BioC 3.13 (R-4.1)
License BSD_3_clause + file LICENSE
Depends R (>= 4.1.0)
Imports utils, reticulate, S4Vectors, methods, basilisk, ExperimentHub, AnnotationHub
LinkingTo
Suggests testthat, knitr, rmarkdown, BiocStyle, MACSdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MACSr_0.99.15.tar.gz
Windows Binary
macOS 10.13 (High Sierra) MACSr_0.99.15.tgz
Source Repository git clone https://git.bioconductor.org/packages/MACSr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MACSr
Package Short Url https://bioconductor.org/packages/MACSr/
Package Downloads Report Download Stats

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