To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IntramiRExploreR")

In most cases, you don't need to download the package archive at all.

IntramiRExploreR

DOI: 10.18129/B9.bioc.IntramiRExploreR    

This is the development version of IntramiRExploreR; to use it, please install the devel version of Bioconductor.

Predicting Targets for Drosophila Intragenic miRNAs

Bioconductor version: Development (3.6)

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

Author: Surajit Bhattacharya and Daniel Cox

Maintainer: Surajit Bhattacharya <sbhattacharya3 at student.gsu.edu>

Citation (from within R, enter citation("IntramiRExploreR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IntramiRExploreR")

Documentation

HTML R Script IntramiRExploreR
PDF   Reference Manual

Details

biocViews GeneExpression, GenePrediction, GeneTarget, Microarray, Software, StatisticalMethod
Version 0.99.8
In Bioconductor since BioC 3.6 (R-3.4)
License GPL-2
Depends R (>= 3.4)
Imports igraph (>= 1.0.1), FGNet(>= 3.0.7), knitr (>= 1.12.3), stats, utils, grDevices, graphics
LinkingTo
Suggests RDAVIDWebService, gProfileR, topGO, KEGGprofile, org.Dm.eg.db, rmarkdown, testthat
SystemRequirements
Enhances
URL https://github.com/sbhattacharya3/IntramiRExploreR/
BugReports https://github.com/sbhattacharya3/IntramiRExploreR/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source IntramiRExploreR_0.99.8.tar.gz
Windows Binary IntramiRExploreR_0.99.8.zip
Mac OS X 10.11 (El Capitan) IntramiRExploreR_0.99.8.tgz
Source Repository git clone https://git.bioconductor.org/packages/IntramiRExploreR
Package Short Url http://bioconductor.org/packages/IntramiRExploreR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: