InteractiveComplexHeatmap

This is the development version of InteractiveComplexHeatmap; for the stable release version, see InteractiveComplexHeatmap.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Make Interactive Complex Heatmaps

Bioconductor version: Development (3.24)

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Author: Zuguang Gu [aut, cre] ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <guzuguang at suat-sz.edu.cn>

Citation (from within R, enter citation("InteractiveComplexHeatmap")):

Zuguang Gu. InteractiveComplexHeatmap: Make Interactive Complex Heatmaps. doi:10.18129/B9.bioc.InteractiveComplexHeatmap, R package version 1.21.0, https://bioconductor.org/packages/InteractiveComplexHeatmap.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("InteractiveComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("InteractiveComplexHeatmap")

The InteractiveComplexHeatmap package	HTML
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Sequencing, Software, Visualization
Version	1.21.0
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.0.0), ComplexHeatmap (>= 2.11.0)
Imports	grDevices, stats, shiny, grid, GetoptLong, S4Vectors (>= 0.26.1), digest, IRanges, kableExtra (>= 1.3.1), utils, svglite, htmltools, clisymbols, jsonlite, RColorBrewer, fontawesome
System Requirements
URL	https://github.com/jokergoo/InteractiveComplexHeatmap
Bug Reports	https://github.com/jokergoo/InteractiveComplexHeatmap/issues

Suggests	knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve (>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks
Linking To
Enhances
Depends On Me
Imports Me	CRISPRball, gINTomics, goatea, mineSweepR
Suggests Me	CTexploreR, metasnf, simona, simplifyEnrichment, VizModules
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	InteractiveComplexHeatmap_1.21.0.tar.gz
Windows Binary (x86_64)	InteractiveComplexHeatmap_1.21.0.zip
macOS Binary (big-sur-x86_64)	InteractiveComplexHeatmap_1.21.0.tgz
macOS Binary (sonoma-arm64)	InteractiveComplexHeatmap_1.21.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/InteractiveComplexHeatmap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/InteractiveComplexHeatmap
Package Short Url	https://bioconductor.org/packages/InteractiveComplexHeatmap/
Package Downloads Report	Download Stats