HiTC

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: Development (3.0)

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C. Dedicated R classes as well as standard methods for quality controls, normalization, visualization, and further analysis are also provided.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiTC")

Citation (from within R, enter citation("HiTC")):

Documentation

PDF R Script Hight-Throughput Chromosome Conformation Capture analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews HighThroughputSequencing, Sequencing, Software
Version 1.9.4
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15.0), methods, IRanges, GenomicRanges
Imports Biostrings, graphics, grDevices, rtracklayer, RColorBrewer, Matrix
Suggests BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source HiTC_1.9.4.tar.gz
Windows Binary HiTC_1.9.4.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) HiTC_1.9.4.tgz
Mac OS X 10.9 (Mavericks) HiTC_1.9.4.tgz
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