GeneBreak

DOI: 10.18129/B9.bioc.GeneBreak    

This is the development version of GeneBreak; for the stable release version, see GeneBreak.

Gene Break Detection

Bioconductor version: Development (3.9)

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Citation (from within R, enter citation("GeneBreak")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GeneBreak", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")

 

PDF R Script GeneBreak
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version 1.13.0
In Bioconductor since BioC 3.2 (R-3.2) (3 years)
License GPL-2
Depends R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports graphics, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/stefvanlieshout/GeneBreak
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneBreak_1.13.0.tar.gz
Windows Binary GeneBreak_1.13.0.zip
Mac OS X 10.11 (El Capitan) GeneBreak_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneBreak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneBreak
Package Short Url http://bioconductor.org/packages/GeneBreak/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: