GSRI

Gene Set Regulation Index

Bioconductor version: Development (3.0)

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <julian.gehring at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSRI")

To cite this package in a publication, start R and enter:

    citation("GSRI")

Documentation

PDF R Script Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, Enrichment, GeneSetEnrichment, Microarray, Software, Transcription
Version 2.13.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL-3
Depends R (>= 2.14.2), fdrtool
Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
Suggests limma, hgu95av2.db
System Requirements
URL http://julian-gehring.github.com/GSRI/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source GSRI_2.13.0.tar.gz
Windows Binary GSRI_2.13.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GSRI_2.13.0.tgz
Mac OS X 10.9 (Mavericks)
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